pumaclust-package {pumaclust} | R Documentation |
This package is to cluster gene expression given the estimated gene expression levels and uncertainties of these measurements from probe-level analysis models.
Package: | pumaclust |
Type: | Package |
Version: | 1.1.0 |
Date: | 2006-8-3 |
License: | GPL |
For the use the package please refer to the vignettes.
Xuejun Liu, Magnus Rattray
Maintainer: Xuejun Liu <liux@cs.man.ac.uk>
Liu,X., Milo,M., Lawrence,N.D. and Rattray,M. (2005) A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips, Bioinformatics, 21(18):3637-3644.
Liu,X., Lin,K.K., Andersen,B., and Rattray,M. (2006) Propagating probe-level uncertainty in model-based gene expression clustering, technical report available upon request.
Related package mmgmos
data(Clust.exampleE) data(Clust.exampleStd) cl<-pumaclust(Clust.exampleE,Clust.exampleStd,clusters=7)