pumaclust-package {pumaclust}R Documentation

Propagate probe-level uncertainty in model-based clustering on gene expression data

Description

This package is to cluster gene expression given the estimated gene expression levels and uncertainties of these measurements from probe-level analysis models.

Details

Package: pumaclust
Type: Package
Version: 1.1.0
Date: 2006-8-3
License: GPL

For the use the package please refer to the vignettes.

Author(s)

Xuejun Liu, Magnus Rattray

Maintainer: Xuejun Liu <liux@cs.man.ac.uk>

References

Liu,X., Milo,M., Lawrence,N.D. and Rattray,M. (2005) A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips, Bioinformatics, 21(18):3637-3644.

Liu,X., Lin,K.K., Andersen,B., and Rattray,M. (2006) Propagating probe-level uncertainty in model-based gene expression clustering, technical report available upon request.

See Also

Related package mmgmos

Examples

  data(Clust.exampleE)
  data(Clust.exampleStd)
  cl<-pumaclust(Clust.exampleE,Clust.exampleStd,clusters=7)

[Package pumaclust version 1.1.0 Index]