plotWhiskers {puma} | R Documentation |
A plot showing error bars for genes of interest.
plotWhiskers( eset , comparisons=c(1,2) , sortMethod = c("logRatio", "PPLR") , numGenes=50 , xlim , main = "PUMA Whiskers plot" , highlightedGenes=NULL )
eset |
An object of class ExpressionSet . |
comparisons |
A 2-element integer vector specifying the columns of data to be compared. |
sortMethod |
The method used to sort the genes. "logRatio" is fold change. PPLR is Probability of Positive Log Ratio (as determined by the pumaDE method). |
numGenes |
~~Describe numGenes here~~ |
xlim |
~~Describe xlim here~~ |
main |
~~Describe main here~~ |
highlightedGenes |
~~Describe highlightedGenes here~~ |
This function has no return value. The output is the plot created.
Richard D. Pearson
Related method pumaDE